SNP Profiles of PA 72 [PER] View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AA	AC	GT	CC	AC	AG	CC	AA	GG	AA	AC	CT	GT
1._PA_72_[PER]	GG	AA	AC	GT	CC	AC	AG	CC	AA	GG	AA	AC	CT	GT
2._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
3._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
4._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
5._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
6._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
7._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
8._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
9._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
10._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
11._PA_72_[PER]	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
12._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
13._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
14._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
15._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
16._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
17._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
18._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
19._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
20._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
21._GC-08-051-1-62	GG	AA	AC	GT	CC	AA	AG	CC	AA	GG	AA	AC	CT	GT
22._GC-08-51-1-62	GG	AA	AC	AC	GG	AC	AG	GG	AA	GG	_	AC	_	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CG	CC	TT	AA	TT	GG	CC	CC	CT	GG	AA	CT	AG	CC
1._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
2._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
3._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
4._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
5._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
6._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
7._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
8._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
9._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
10._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
11._PA_72_[PER]	CG	CC	TT	AA	_	GG	_	CC	CT	GG	AA	CT	AG	CC
12._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
13._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
14._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
15._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
16._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
17._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
18._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
19._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
20._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
21._GC-08-051-1-62	CG	CC	TT	AA	GG	GG	CC	CC	CT	GG	AA	CT	AG	CC
22._GC-08-51-1-62	CG	CC	AA	_	CC	CC	_	GG	AG	GG	AA	AG	AG	GG

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
1._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
2._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
3._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
4._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
5._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
6._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
7._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
8._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
9._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
10._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
11._PA_72_[PER]	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
12._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
13._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
14._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
15._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
16._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
17._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
18._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
19._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
20._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
21._GC-08-051-1-62	GG	AA	CC	CC	TT	CC	AC	TT	CT	GG	AG	CT	X_X	X_X
22._GC-08-51-1-62	GG	AA	_	_	AA	GG	AC	AA	AG	CC	AG	AG	X_X	X_X

Input profile: PA_72_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 633

Dapeng Zhang, 2014

1._PA_72_[PER]

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 633

Dapeng Zhang, 2016

2._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 7 > FP

Dapeng Zhang, 2016

3._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 4 > FP

Dapeng Zhang, 2016

4._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 1 > FP

Dapeng Zhang, 2016

5._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 10

Dapeng Zhang, 2016

6._PA_72_[PER]

98.7 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8162 9

Dapeng Zhang, 2016

7._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 8

Dapeng Zhang, 2016

8._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 6

Dapeng Zhang, 2016

9._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 5

Dapeng Zhang, 2016

10._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 3

Dapeng Zhang, 2016

11._PA_72_[PER]

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8162 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

13._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

14._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

16._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

17._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

18._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

19._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

20._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

21._PA_72_[PER] GC-08-051-1-62

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

22._PA_72_[PER] GC-08-51-1-62

50 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 62, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP230	8	TcSNP242	9	TcSNP372	10	TcSNP429
11	TcSNP469	12	TcSNP529	13	TcSNP534	14	TcSNP560	15	TcSNP577
16	TcSNP591	17	TcSNP619	18	TcSNP645	19	TcSNP836	20	TcSNP872
21	TcSNP878	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520